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Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much

Neural Information Processing Systems

Gibbs sampling is a Markov Chain Monte Carlo sampling technique that iteratively samples variables from their conditional distributions. There are two common scan orders for the variables: random scan and systematic scan. Due to the benefits of locality in hardware, systematic scan is commonly used, even though most statistical guarantees are only for random scan. While it has been conjectured that the mixing times of random scan and systematic scan do not differ by more than a logarithmic factor, we show by counterexample that this is not the case, and we prove that that the mixing times do not differ by more than a polynomial factor under mild conditions. To prove these relative bounds, we introduce a method of augmenting the state space to study systematic scan using conductance.



Flatten Wisely: How Patch Order Shapes Mamba-Powered Vision for MRI Segmentation

Hardan, Osama, Elshenhabi, Omar, Khattab, Tamer, Mabrok, Mohamed

arXiv.org Artificial Intelligence

Vision Mamba models promise transformer-level performance at linear computational cost, but their reliance on serializing 2D images into 1D sequences introduces a critical, yet overlooked, design choice: the patch scan order. In medical imaging, where modalities like brain MRI contain strong anatomical priors, this choice is non-trivial. This paper presents the first systematic study of how scan order impacts MRI segmentation. We introduce Multi-Scan 2D (MS2D), a parameter-free module for Mamba-based architectures that facilitates exploring diverse scan paths without additional computational cost. We conduct a large-scale benchmark of 21 scan strategies on three public datasets (BraTS 2020, ISLES 2022, LGG), covering over 70,000 slices. Our analysis shows conclusively that scan order is a statistically significant factor (Friedman test: $χ^{2}_{20}=43.9, p=0.0016$), with performance varying by as much as 27 Dice points. Spatially contiguous paths -- simple horizontal and vertical rasters -- consistently outperform disjointed diagonal scans. We conclude that scan order is a powerful, cost-free hyperparameter, and provide an evidence-based shortlist of optimal paths to maximize the performance of Mamba models in medical imaging.


Direction-Aware Diagonal Autoregressive Image Generation

Xu, Yijia, Ju, Jianzhong, Luan, Jian, Cui, Jinshi

arXiv.org Artificial Intelligence

The raster-ordered image token sequence exhibits a significant Euclidean distance between index-adjacent tokens at line breaks, making it unsuitable for autoregressive generation. To address this issue, this paper proposes Direction-Aware Diagonal Autoregressive Image Generation (DAR) method, which generates image tokens following a diagonal scanning order. The proposed diagonal scanning order ensures that tokens with adjacent indices remain in close proximity while enabling causal attention to gather information from a broader range of directions. Additionally, two direction-aware modules: 4D-RoPE and direction embeddings are introduced, enhancing the model's capability to handle frequent changes in generation direction. To leverage the representational capacity of the image tokenizer, we use its codebook as the image token embeddings. We propose models of varying scales, ranging from 485M to 2.0B. On the 256$\times$256 ImageNet benchmark, our DAR-XL (2.0B) outperforms all previous autoregressive image generators, achieving a state-of-the-art FID score of 1.37.


Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much

Neural Information Processing Systems

Gibbs sampling is a Markov Chain Monte Carlo sampling technique that iteratively samples variables from their conditional distributions. There are two common scan orders for the variables: random scan and systematic scan. Due to the benefits of locality in hardware, systematic scan is commonly used, even though most statistical guarantees are only for random scan. While it has been conjectured that the mixing times of random scan and systematic scan do not differ by more than a logarithmic factor, we show by counterexample that this is not the case, and we prove that that the mixing times do not differ by more than a polynomial factor under mild conditions. To prove these relative bounds, we introduce a method of augmenting the state space to study systematic scan using conductance.


Reviews: Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much

Neural Information Processing Systems

I think this paper addresses an important issue and makes valuable contributions, and thus should be published. I have a few concerns, hence my lower rating for the last question above (which I think could be addressed relatively easily, however). I think this is fundamentally *OK* and even perhaps a positive thing. However, I think a bit more discussion needs to be given to how the arguments might be made more formal. For example, in Section 2.1, I think the proof is intended to hold only in the limit of M going to infinity. Please give a stament of what should hold in what limit-- this wasn't clear to me.


MambaTS: Improved Selective State Space Models for Long-term Time Series Forecasting

Cai, Xiuding, Zhu, Yaoyao, Wang, Xueyao, Yao, Yu

arXiv.org Artificial Intelligence

In recent years, Transformers have become the de-facto architecture for long-term sequence forecasting (LTSF), but faces challenges such as quadratic complexity and permutation invariant bias. A recent model, Mamba, based on selective state space models (SSMs), has emerged as a competitive alternative to Transformer, offering comparable performance with higher throughput and linear complexity related to sequence length. In this study, we analyze the limitations of current Mamba in LTSF and propose four targeted improvements, leading to MambaTS. We first introduce variable scan along time to arrange the historical information of all the variables together. We suggest that causal convolution in Mamba is not necessary for LTSF and propose the Temporal Mamba Block (TMB). We further incorporate a dropout mechanism for selective parameters of TMB to mitigate model overfitting. Moreover, we tackle the issue of variable scan order sensitivity by introducing variable permutation training. We further propose variable-aware scan along time to dynamically discover variable relationships during training and decode the optimal variable scan order by solving the shortest path visiting all nodes problem during inference. Extensive experiments conducted on eight public datasets demonstrate that MambaTS achieves new state-of-the-art performance.


Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much

Neural Information Processing Systems

Gibbs sampling is a Markov Chain Monte Carlo sampling technique that iteratively samples variables from their conditional distributions. There are two common scan orders for the variables: random scan and systematic scan. Due to the benefits of locality in hardware, systematic scan is commonly used, even though most statistical guarantees are only for random scan. While it has been conjectured that the mixing times of random scan and systematic scan do not differ by more than a logarithmic factor, we show by counterexample that this is not the case, and we prove that that the mixing times do not differ by more than a polynomial factor under mild conditions. To prove these relative bounds, we introduce a method of augmenting the state space to study systematic scan using conductance.


Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much

He, Bryan D., Sa, Christopher M. De, Mitliagkas, Ioannis, Ré, Christopher

Neural Information Processing Systems

Gibbs sampling is a Markov Chain Monte Carlo sampling technique that iteratively samples variables from their conditional distributions. There are two common scan orders for the variables: random scan and systematic scan. Due to the benefits of locality in hardware, systematic scan is commonly used, even though most statistical guarantees are only for random scan. While it has been conjectured that the mixing times of random scan and systematic scan do not differ by more than a logarithmic factor, we show by counterexample that this is not the case, and we prove that that the mixing times do not differ by more than a polynomial factor under mild conditions. To prove these relative bounds, we introduce a method of augmenting the state space to study systematic scan using conductance.


Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much

He, Bryan D., Sa, Christopher M. De, Mitliagkas, Ioannis, Ré, Christopher

Neural Information Processing Systems

Gibbs sampling is a Markov Chain Monte Carlo sampling technique that iteratively samples variables from their conditional distributions. There are two common scan orders for the variables: random scan and systematic scan. Due to the benefits of locality in hardware, systematic scan is commonly used, even though most statistical guarantees are only for random scan. While it has been conjectured that the mixing times of random scan and systematic scan do not differ by more than a logarithmic factor, we show by counterexample that this is not the case, and we prove that that the mixing times do not differ by more than a polynomial factor under mild conditions. To prove these relative bounds, we introduce a method of augmenting the state space to study systematic scan using conductance.